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Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOXA1
wikigenes
PDBj
CellType: NCI-H441
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX15278055
GSM6152848: NCI-H441 FOXA1 CST, 100nM dexamethasone, biol rep2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOXA1
Cell type
Cell type Class
Lung
Cell type
NCI-H441
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma Papillary
Attributes by original data submitter
Sample
source_name
NCI-H441
cell line
NCI-H441
cell type
Human papillary lung adenocarcinoma
chip antibody
FOXA1 (CST, #53528)
treatment
100nM dexamethasone treatment, 30 mins.
Sequenced DNA Library
library_name
GSM6152848
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed and extracts prepared according to the manufacturer's protocol (SimpleChIP Enzymatic Chromatin IP Kit, CST, #9005) ChIP-seq libraries were prepared by Genewiz (Azenta)
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
19529477
Reads aligned (%)
90.7
Duplicates removed (%)
25.7
Number of peaks
620 (qval < 1E-05)
hg19
Number of total reads
19529477
Reads aligned (%)
89.8
Duplicates removed (%)
26.3
Number of peaks
295 (qval < 1E-05)
Base call quality data from
DBCLS SRA