SRX15278055
GSM6152848: NCI-H441 FOXA1 CST, 100nM dexamethasone, biol rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Lung
Cell type
NCI-H441
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma Papillary

Attributes by original data submitter

Sample

source_name
NCI-H441
cell line
NCI-H441
cell type
Human papillary lung adenocarcinoma
chip antibody
FOXA1 (CST, #53528)
treatment
100nM dexamethasone treatment, 30 mins.

Sequenced DNA Library

library_name
GSM6152848
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed and extracts prepared according to the manufacturer's protocol (SimpleChIP Enzymatic Chromatin IP Kit, CST, #9005) ChIP-seq libraries were prepared by Genewiz (Azenta)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19529477
Reads aligned (%)
90.7
Duplicates removed (%)
25.7
Number of peaks
620 (qval < 1E-05)

hg19

Number of total reads
19529477
Reads aligned (%)
89.8
Duplicates removed (%)
26.3
Number of peaks
295 (qval < 1E-05)

Base call quality data from DBCLS SRA